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                                                     E-Content in 4 Quadrants/E-book

Fish Breeding and Hatchery Operation Course

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                                                             Course Coordinator

                                                        Dr.Mohd Ashraf Rather

Division of Fish Genetics and Biotechnology, Faculty of Fisheries, Rangil- Ganderbal, SKUAST-Kashmir

Contents

Section 1: Introduction to Rainbow Trout and Raceway Culture 

1.1 Introduction of Rainbow trout

1.2 Raceway Culture of Rainbow trout

Section 2: Brood Stock Management and Selection 

2.1 Brood Stock Management

2.2 Selection and Identification of Brood Stock

Section 3: Breeding Techniques 

3.1 Breeding of Rainbow trout

3.2 Demonstration of Stripping Methods (Wet and Dry Methods)

Section 4: Hatchery Management and Operations 

4.1 Egg Handling and Incubation

4.2 Monitoring and Maintaining Optimal Conditions for Incubation

4.3 Hatchery Operations and Record Keeping

Section 1: Introduction to Rainbow Trout and Raceway Culture

1.1 Introduction of Rainbow trout

The Rainbow Trout (Oncorhynchus mykiss) is a species of salmonid native to cold-water tributaries of the Pacific Ocean in North America and Asia. It is one of the most commercially important and widely cultured coldwater fish species in the world, prized for its rapid growth, adaptability to various culture environments, and high market demand for both food and sport fishing.

Taxonomy and Morphology

Originally named Salmo gairdneri, genetic studies in 1989 revealed its closer relation to Pacific salmon, leading to its reclassification into the genus Oncorhynchus. Adult freshwater stream trout typically weigh between 0.5 and 2.5 kg. They are distinguished by their vibrant, multi-hued coloration. The body is generally blue-green or olive green with heavy black spotting. A characteristic broad reddish-pink stripe runs along the lateral line from the gills to the tail, which is most vivid in breeding males. The anadromous (sea-run) form, known as steelhead, is more silvery and can grow much larger, reaching up to 9 kg.

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Figure 1: The Rainbow Trout (Oncorhynchus mykiss), showcasing its distinctive pink lateral stripe and spotted pattern.

Life Cycle and Reproduction

The life cycle of the rainbow trout begins with eggs laid in a gravel nest, or “redd,” created by the female in a stream or river. Spawning is naturally triggered by environmental cues, primarily increasing day length (photoperiod) and water temperatures reaching 6 to 7°C (42 to 44°F), which typically occurs in late winter or spring.

1. Egg Stage:  Fertilized eggs incubate in the gravel for 4 to 10 weeks, depending on water temperature. During this time, they are vulnerable to sediment, low oxygen, and predation.

2. Alevin (Sac Fry) Stage:  Upon hatching, the young fish, called alevins, remain in the gravel. They are attached to a yolk sac, which provides their nutrition for the first 2-3 weeks.

3. Fry Stage:  Once the yolk sac is absorbed, the fry emerge from the gravel and begin to actively search for food, such as zooplankton and small insects.

4. Parr/Juvenile Stage:  As they grow, they develop vertical bars on their sides known as “parr marks” for camouflage. They remain in this stage for one to three years.

5. Adult Stage:  Upon reaching maturity, they are ready to spawn. While some populations remain in freshwater for their entire lives, others (steelhead) migrate to the ocean to feed and grow before returning to freshwater to reproduce.

Ecological and Economic Significance

Rainbow trout have been introduced to every continent except Antarctica for recreational fishing and aquaculture. Their adaptability has allowed them to establish wild, self-sustaining populations in many regions. However, this has also led to them being listed as one of the world’s top 100 invasive species, as they can out-compete, prey on, or hybridize with native fish species.

In aquaculture, rainbow trout are highly valued. They are relatively easy to spawn under artificial conditions, grow quickly, and are tolerant of handling and a range of environments. This makes them an ideal candidate for intensive farming systems, such as raceways, which contribute significantly to global seafood production and provide economic opportunities in rural and mountainous regions.

1.2 Raceway Culture of Rainbow trout

Raceway culture is a highly intensive, flow-through aquaculture system commonly used for the commercial production of salmonids, particularly rainbow trout. This system relies on a constant flow of high-quality water to maintain a healthy environment for fish stocked at high densities.

Principles of Raceway Systems

A raceway is a rectangular channel, typically made of concrete, fiberglass, or earth, through which water flows continuously from an inlet to an outlet. The constant water exchange serves two primary functions:

1. Oxygen Supply:  It delivers a continuous supply of dissolved oxygen, which is essential for the respiration of densely stocked fish.

2. Waste Removal:  It flushes away metabolic wastes, such as ammonia and carbon dioxide, as well as uneaten feed and feces, preventing the buildup of toxic substances.

Because of these functions, the carrying capacity of a raceway is determined not by its volume, but by the flow rate and quality of the incoming water.

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Fish Breeding and Hatchery Operation Course 9

Figure 2: A series of concrete raceways at a commercial trout farm, illustrating the linear flow-through design.

Design and Construction

Raceways are designed to optimize water flow and facilitate farm management. Key design considerations include:

• Material:  Concrete is the most common material due to its durability and ease of cleaning. Earthen raceways are cheaper but harder to manage, while fiberglass tanks are used for smaller-scale or specialized operations.

• Dimensions:  A typical commercial raceway is 12-30 meters long, 2-3 meters wide, and 1-1.2 meters deep. Raceways are often built in a series, where water flows from one unit to the next, cascading over a drop to re-aerate the water.

• Water Flow and Exchange Rate:  The flow rate must be sufficient to maintain dissolved oxygen levels above 5 ppm (parts per million) and to keep ammonia concentrations low. A water exchange rate of 2-3 times per hour is common. The ideal water velocity is around 0.1 ft/sec to encourage fish to swim and to help keep the bottom clean.

• Inlet and Outlet Structures:  Inlets are designed to distribute water evenly, while outlets are screened to prevent fish from escaping. Outlets are often designed to facilitate waste removal from the bottom of the raceway.

Management of Raceway Systems

Effective management is crucial for success in raceway culture.

Feeding:  Fish are fed a nutritionally complete, high-protein pelleted diet. Feeding can be done by hand or with automatic feeders. Careful observation is needed to avoid overfeeding, which wastes feed and degrades water quality.

Stocking Density:  Fish are stocked at high densities, calculated based on the water flow rate and oxygen availability. Densities are managed through regular grading and splitting of stocks.

Water Quality Monitoring:  Key parameters like dissolved oxygen, temperature, pH, and ammonia must be monitored daily.

Cleaning:  Raceways must be cleaned regularly (often weekly) to remove accumulated feces and uneaten feed, which can deplete oxygen and harbor pathogens.

Advantages and Disadvantages of Raceway Culture

AdvantagesDisadvantages
High Productivity:  Allows for very high production per unit of space.High Water Requirement:  Requires a large, constant supply of high-quality water.
Excellent Observation:  Fish are easily visible, allowing for efficient feeding and early detection of disease or stress.Effluent Discharge:  Produces a large volume of effluent that may require treatment to meet environmental regulations.
Ease of Management:  Tasks like grading, inventory, and harvesting are simpler than in ponds.Site Limitation:  Suitable sites with adequate water and topography (for gravity flow) are rare.
Good Control:  Provides better control over the culture environment and fish inventory.Dependency on Flow:  A failure in water supply can be catastrophic, leading to rapid oxygen depletion and fish mortality.

Despite the challenges, raceway culture remains the dominant method for farming rainbow trout due to its efficiency and the high level of control it offers producers. Proper site selection, design, and diligent management are the keys to a successful and sustainable raceway operation.

Section 2: Brood Stock Management and Selection

2.1 Brood Stock Management

Brood stock management is the cornerstone of any successful hatchery operation. The primary objective is to produce the maximum number of high-quality eggs and milt from healthy, genetically superior parent fish. The quality of the eggs and subsequent fry is directly dependent on the health, nutrition, and environmental conditions of the brood stock. Effective management involves careful control over feeding, environment, and health throughout the reproductive cycle.

Nutritional Management

The nutritional status of brood fish has a profound impact on fecundity (number of eggs), egg size, and the viability of eggs and fry. Brood stock require specialized diets that are higher in certain vitamins and lipids compared to grow-out feeds.

High-Quality Protein and Lipids:  Essential for the development of gonads (ovaries and testes). Lipids, particularly highly unsaturated fatty acids (HUFAs), are critical components of egg yolks and cell membranes.

Vitamin Supplementation:  Vitamins C and E are crucial antioxidants that protect eggs and sperm from oxidative damage, improving fertilization rates and larval survival. Ascorbic acid (Vitamin C) is particularly important for egg quality.

Feeding Strategy:  Brood fish are typically fed a restricted ration (e.g., 0.8% of body weight daily) to prevent them from becoming overly fat, which can impair reproductive performance. Feeding frequency and ration may be adjusted based on the stage of gonadal development and water temperature.

Environmental Control

Rainbow trout spawning is naturally controlled by environmental cues. In a hatchery, these cues can be manipulated to control the timing of maturation and synchronize spawning within the brood stock population. This allows for a predictable, year-round supply of eggs.

Photoperiod Manipulation

Photoperiod (day length) is the primary environmental cue that controls reproduction in rainbow trout. By using artificial lighting to alter the perceived seasonal light cycle, hatcheries can induce fish to spawn months outside of their natural spring season.

Advancing Spawning:  Exposing fish to a period of long days followed by a rapid shift to short days can advance the spawning season. For example, a compressed “year” of light cycles can induce some strains to spawn twice annually.

Delaying Spawning:  Maintaining fish under constant long-day conditions can delay the onset of sexual maturation.

Temperature Control

Water temperature influences the rate of gonadal development and the final timing of ovulation. While photoperiod initiates the maturation process, temperature governs the speed at which it proceeds.

Optimal Range:  The ideal temperature for gonadal development and spawning is typically between 8°C and 12°C (46°F to 54°F).

Spawning Induction:  A gradual decrease in water temperature can help simulate the onset of winter and finalize the maturation process initiated by photoperiod changes.

Health Management and Biosecurity

Maintaining a healthy, disease-free brood stock is critical. Diseases can reduce reproductive performance and, more importantly, can be vertically transmitted from parent to offspring via the eggs.

Regular Health Screening:  Brood fish should be regularly monitored for signs of disease. This includes testing for major viral and bacterial pathogens.

Vaccination:  Brood stock can be vaccinated against common diseases like Enteric Redmouth Disease (ERM) and Bacterial Coldwater Disease (BCWD). This not only protects the brood fish but can also confer passive immunity to the offspring.

Biosecurity:  Strict biosecurity protocols are essential. This includes using a separate, isolated water supply for brood stock, disinfecting all equipment, and restricting access to brood stock holding areas to prevent the introduction of pathogens.

Handling:  Minimize handling stress, as it can negatively impact gamete quality. When handling is necessary (e.g., for checking ripeness or spawning), fish should be anesthetized.

2.2 Selection and Identification of Brood Stock

The goal of a brood stock selection program is to continuously improve the genetic quality of the cultured population. By selecting parent fish with desirable traits, hatcheries can enhance performance characteristics such as growth rate, feed conversion, disease resistance, and fecundity in subsequent generations.

Selection Criteria

Selection can be based on phenotype (observable traits) or genotype (genetic makeup). Modern breeding programs often use a combination of both.

Growth Rate:  Selecting the fastest-growing individuals is a primary goal to improve production efficiency.

Disease Resistance:  Breeding for resistance to specific, problematic diseases is a key strategy to reduce mortality and the need for chemical treatments.

Fecundity and Egg Quality:  Females are selected for high fecundity (producing a large number of eggs relative to their body size) and large egg size. Larger eggs often produce larger, more robust fry.

Body Conformation:  Fish with a desirable body shape and high fillet yield are selected.

Late Maturation:  For grow-out fish, sexual maturation is undesirable as it diverts energy from growth and reduces flesh quality. Therefore, brood stock may be selected for later maturation.

Genetic Diversity:  It is crucial to manage breeding programs to avoid inbreeding, which can lead to reduced performance and increased deformities. This involves maintaining a large effective population size and using structured mating plans (e.g., avoiding mating of close relatives).

Identification of Sexes

Distinguishing between male and female rainbow trout is essential for spawning operations. While it can be difficult in juvenile fish, sexual dimorphism (physical differences between sexes) becomes apparent as they approach sexual maturity.

Male Characteristics:

Kype:  The most prominent feature of a mature male is the development of a kype, a pronounced hook on the lower jaw.

Elongated Snout:  Males generally have a longer, more pointed snout compared to females.

Vibrant Coloration:  During the spawning season, males develop much brighter and more intense coloration, especially the red lateral stripe.

Body Shape:  Males tend to have a more streamlined, laterally compressed body.

Anal Fin:  The anal fin of a male is often slightly convex (curved outwards).

Female Characteristics:

Rounded Snout:  Females retain a shorter, more rounded snout.

Full, Rounded Abdomen:  A ripe female ready to spawn will have a distinctly swollen, soft abdomen due to the mass of eggs.

Extended Vent:  The vent (urogenital opening) of a ripe female becomes enlarged, reddish, and protrudes.

Body Shape:  Females have a rounder, fuller body shape to accommodate the developing ovaries.

Anal Fin:  The anal fin of a female is typically straight or slightly concave (curved inwards).

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Fish Breeding and Hatchery Operation Course 10

Figure 5: Difference between male and female Rainbow trout

Checking for Ripeness

As the spawning season approaches, brood stock must be checked regularly (e.g., weekly) to identify ripe individuals. This process must be done carefully to avoid stressing the fish or damaging the eggs.

1. Anesthetize the fish:  Use an approved anesthetic like MS-222 to calm the fish for safe handling.

2. Examine the female:  Hold the fish gently and check for the physical signs of ripeness (swollen abdomen, extended vent).

3. Test for egg flow:  Apply gentle pressure on the abdomen, stroking from the pelvic fins towards the vent. In a fully ripe (“running”;) female, eggs will flow freely with minimal pressure. If eggs do not flow, or if they are opaque and hard, the fish is not yet ready and should be returned to the holding tank.

4. Check males:  Ripe males will release white milt (sperm) with gentle pressure on their abdomen.

Only fully ripe fish should be used for spawning to ensure the highest possible fertilization rates.

Section 3: Breeding Techniques

3.1 Breeding of Rainbow trout

In commercial aquaculture, rainbow trout do not spawn naturally in culture systems like raceways or tanks. Therefore, artificial propagation is a mandatory and fundamental practice. This process involves the manual collection of eggs (ova) and sperm (milt) from ripe brood stock, followed by controlled fertilization. This allows for the production of large quantities of fry on a predictable schedule.

Hormonal Induction of Spawning

While photoperiod and temperature manipulation are used to control the overall timing of maturation, hormonal treatments can be used to synchronize final ovulation and spawning in a group of females. This is particularly useful for ensuring that a large number of females are ripe at the same time, which streamlines hatchery operations.

The most common approach involves using a synthetic analogue of Gonadotropin-Releasing Hormone (GnRHa). These hormones stimulate the fish’s pituitary gland to release gonadotropins, which in turn trigger final oocyte maturation and ovulation.

• Common Products:  Commercially available products like  Ovaprim™  are widely used. Ovaprim contains a GnRHa analogue (salmon GnRH) combined with a dopamine antagonist (domperidone), which enhances its effect.

Administration:  The hormone is administered via an intramuscular injection, typically in the dorsal muscle just below the dorsal fin. The dosage is calculated based on the fish’s body weight (e.g., 0.3-0.5 ml of Ovaprim per kg of body weight).

Response Time:  Following injection, ovulation typically occurs within a specific timeframe, which is dependent on water temperature. For rainbow trout, this can be anywhere from 48 to 72 hours or longer.

Hormonal induction helps to improve spawning efficiency, reduce the holding time for brood stock, and ensure a concentrated spawning period.

The Spawning Process: Stripping

Once fish are determined to be ripe, the process of manually expelling the gametes, known as “stripping” or “egg taking,” begins. This is a delicate procedure that requires skill and care to maximize gamete quality and minimize stress and injury to the brood fish.

The general procedure is as follows:

1. Anesthetize the Fish:  Both male and female fish are anesthetized to prevent struggling, which can cause injury and lead to the release of feces or urine that can contaminate the gametes.

2. Clean and Dry the Fish:  The fish is carefully wiped with a soft, dry cloth to remove water, mucus, and any potential contaminants from its surface. This is especially critical for the dry stripping method.

3. Position the Fish:  The fish is held firmly but gently, typically with its head slightly elevated and tail down, to allow gametes to flow easily from the vent.

4. Apply Gentle Pressure:  The operator applies smooth, consistent pressure to the abdomen, starting from behind the pectoral fins and moving towards the vent. This pressure expels the eggs or milt. Excessive force must be avoided as it can rupture internal organs or break eggs.

5. Post-Stripping Care:  After stripping, the brood fish are gently placed in a separate, well-oxygenated recovery tank to recover from the anesthetic and the procedure before being returned to their main holding raceway.

The collected eggs and milt are then combined for fertilization using one of two primary methods: the wet method or the dry method.

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Fish Breeding and Hatchery Operation Course 11

Figure 6: Process of stripping.

3.2 Demonstration of Stripping Methods (Wet and Dry Methods)

The success of artificial fertilization depends heavily on the technique used to combine the eggs and milt. The dry method is overwhelmingly preferred in modern trout aquaculture for its superior fertilization rates.

The Dry Method of Fertilization

The dry method involves mixing eggs and milt in the absence of water. This is the most common and effective technique for salmonids. The rationale is that trout sperm have a very short period of motility (typically less than one minute) once they come into contact with water. By mixing the gametes first, the sperm are distributed evenly among the eggs before water is added to activate them, ensuring maximum contact and fertilization.

Step-by-Step Procedure (Dry Method):

1. Prepare Equipment:  Use a clean, completely dry plastic or stainless-steel bowl for collecting the eggs.

2. Strip the Female:  Anesthetize and wipe the female dry. Gently strip the eggs into the dry bowl, taking care to avoid any water, urine, or feces.

3. Strip the Male:  Immediately strip milt from one or more ripe males directly onto the eggs. A common practice is to use milt from 2-3 males for each batch of eggs to ensure genetic diversity and guard against using an infertile male.

4. Mix Gently:  Gently swirl the bowl or use a clean, soft feather to mix the eggs and milt for about 30 seconds, ensuring all eggs are coated with milt.

5. Activate with Water:  Add just enough clean, high-quality water to cover the eggs. Swirl the mixture again for another minute. The water activates the sperm, and fertilization occurs as they enter the eggs through a small opening called the micropyle.

6. Rest and Rinse:  Let the eggs stand for 10-20 minutes to allow fertilization to complete. Then, gently rinse the eggs with clean water several times to wash away excess milt, broken eggs, and other debris.

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 Figure 7: The dry stripping method, where eggs are collected into a dry bowl before milt is added.

The Wet Method of Fertilization

The wet method, developed in the 18th century, was the original technique for artificial propagation. It involves stripping eggs into a pan that already contains water. While historically important, this method is now rarely used for trout because it results in significantly lower fertilization rates.

Step-by-Step Procedure (Wet Method):

1. Prepare Bowl:  Fill a bowl with a small amount of clean hatchery water.

2. Strip Gametes:  Strip the eggs from the female directly into the water. Immediately after, strip milt from the male into the same bowl.

3. Mix:  Quickly swirl the bowl to mix the eggs, milt, and water.

The primary drawback of this method is that the sperm are activated by the water immediately upon release. Their motility is short-lived, and they become diluted in the water, drastically reducing the chances of them finding and fertilizing an egg. Fertilization rates with the wet method can be as low as 20%, compared to over 90% often achieved with the dry method.

Comparison of Stripping Methods

FeatureDry MethodWet Method
Fertilization RateHigh (typically >90%)Low (often 20-50%)
PrincipleSperm are mixed with eggs before water activation, maximizing contact.Sperm are activated and diluted in water before contacting eggs.
Modern UsageStandard practice in all commercial salmonid hatcheries.Largely obsolete for trout; of historical interest.
RequirementsRequires careful handling to keep gametes dry until mixing.Simpler in concept but far less effective.

Alternative Method: Air Stripping

A more recent innovation is the pneumatic or “;air stripping” method. This technique uses compressed air injected into the body cavity of the fish to expel the eggs, rather than manual abdominal pressure.

Procedure:  The anesthetized female is held at an angle, and a needle is inserted into the body cavity. A low-pressure stream of air (e.g., 0.5 bar) is introduced, which gently forces the eggs out.

Advantages:  Studies have shown that for rainbow trout, air stripping can result in higher quality eggs (higher ovarian fluid pH), reduced physical damage to the brood fish, and potentially lower post-spawning mortality compared to manual hand stripping. It is also less labor-intensive and can be performed efficiently by less experienced staff.

• Considerations:  The equipment and technique must be properly calibrated to avoid injuring the fish. While promising, it is not as universally adopted as the manual dry method.

Section 4: Hatchery Management and Operations

4.1 Egg Handling and Incubation

After fertilization, the eggs enter a critical developmental phase that requires careful handling and a precisely controlled environment. Proper incubation is essential for achieving high hatch rates and producing healthy fry.

Water Hardening and Disinfection

Immediately after fertilization and rinsing, the eggs undergo a process called “water hardening.”

Water Hardening:  The eggs absorb water for about an hour, causing them to swell by up to 40% and become firm and resilient. During this time, the pores on the eggshell seal, preventing further entry of water or sperm. This process should be done in clean, well-aerated water.

Disinfection:  To prevent the transmission of pathogens from the brood stock or the environment, the water-hardened eggs are disinfected. This is typically done by immersing them in an iodophor solution (e.g., Betadine® or Argentyne®) at a concentration of 100 ppm for 10 minutes. After disinfection, the eggs are thoroughly rinsed with clean water before being placed in incubators.

Egg Enumeration

Before placing eggs into incubators, it is necessary to estimate their total number for record-keeping and production planning. Common methods include:

Volumetric (Displacement) Method:  A small, known number of eggs (e.g., 50) are placed in a graduated cylinder with a known volume of water. The volume of water displaced by the eggs is measured. This allows for the calculation of eggs per milliliter, which can then be used to estimate the total number of eggs in the entire batch by measuring its total volume. This method is fast, simple, and widely used.

Weight Method:  Similar to the volumetric method, but based on weight.

Electronic Counters:  Automated counters provide a fast and accurate count but represent a significant capital investment.

Incubation Systems

Once counted and disinfected, eggs are moved to specialized incubators that provide a continuous flow of clean, oxygenated water. The most common types are:

Vertical Tray Incubators (Heath Stacks)

These are the most common incubators in commercial trout hatcheries. They consist of a stack of 8 to 16 trays. Water flows into the top tray, upwells through the eggs, and then cascades down to the next tray, becoming re-aerated in the process. This design is highly efficient in its use of floor space and water.

Upwelling Incubators (Jars)

These are typically cylindrical jars where water flows in from the bottom, gently suspending or “tumbling” the eggs. This ensures that all eggs are evenly exposed to oxygenated water and helps to keep them clean. They are self-cleaning to some extent, as dead eggs and debris are carried out with the outflow.

Horizontal Incubators (California Trays)

These are simple, screened baskets placed in series within a standard rearing trough. Water is forced to flow up through the eggs in each basket. While simple and inexpensive, they are less space-efficient than vertical incubators.

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Fish Breeding and Hatchery Operation Course 12

Figure 6: A vertical tray incubator, or “Heath stack,” is a space-efficient system for incubating large numbers of trout eggs.

4.2 Monitoring and Maintaining Optimal Conditions for Incubation

The incubation period is a vulnerable stage, and survival depends on maintaining optimal environmental conditions. The rate of embryonic development is directly controlled by water temperature, measured in “degree-days.”

Key Water Quality Parameters

Constant monitoring and control of water quality are paramount.

• Temperature:  This is the most critical factor. The optimal range for rainbow trout egg incubation is 8°C to 12°C (46°F to 54°F). Temperatures outside this range can slow development, cause deformities, or lead to mortality. At 10°C, eggs typically hatch in about 30-35 days.

Dissolved Oxygen (DO):  Eggs have a high metabolic rate and require constant, high levels of oxygen. The incoming water should be near saturation (>;95%), and the outflowing water should not drop below 75% saturation (or >6 ppm).

pH:  The ideal pH range is between 6.7 and 8.0. Extreme pH levels can damage the eggs and reduce hatch rates.

Water Flow:  A gentle but steady flow is required to deliver oxygen and carry away waste. Recommended flow rates for vertical incubators are 4-6 gallons per minute.

Light:  Trout eggs and alevins are sensitive to direct light, especially UV light. Incubators should be covered to keep the developing embryos in darkness.

Egg “Picking” and Fungus Control

During incubation, some eggs will inevitably die. These dead eggs are infertile or have ceased development and quickly become a breeding ground for fungus (typically Saprolegnia), which can spread and kill adjacent healthy eggs.

The “Eyed” Stage

About halfway through incubation, the pigmented eyes of the embryo become clearly visible through the eggshell. This is known as the “eyed” stage. At this point, the eggs become much more resilient to physical shock. This is the stage at which eggs are typically shipped from brood stock farms to production hatcheries.

Shocking and Picking

Once eggs reach the eyed stage, they can be “shocked” by siphoning them from one bucket to another. This mild physical shock causes any dead or infertile eggs to turn opaque and white, making them easy to identify.

These dead, white eggs must be removed, a process called “picking.” This can be done manually with forceps or suction bulbs, which is labor-intensive. Larger hatcheries use electronic egg sorters that can pick over 100,000 eggs per hour, using light sensors to differentiate between live (translucent) and dead (opaque) eggs.

Chemical Treatment

If fungal infections become a problem, they can be controlled with a daily chemical bath. A 15-minute flush with formalin at a concentration of 1:600 (1,667 ppm) is a common treatment. However, chemical treatments should not be used within 24 hours of hatching.

4.3 Hatchery Operations and Record Keeping

Hatchery operations extend from the moment the eggs hatch to when the fry are ready for transfer to grow-out systems. This period, known as early rearing, is critical for establishing a strong and healthy cohort of fish. Meticulous record-keeping is the backbone of managing this process effectively.

From Hatching to First Feeding

1. Hatching:  Hatching for a single batch of eggs typically occurs over 2-3 days. As alevins emerge, eggshells should be removed to maintain cleanliness.

2. Alevin (Sac Fry) Stage:  The newly hatched alevins still have their yolk sac, which they will absorb over the next 2-3 weeks. They remain in the low-light environment of the incubator trays or troughs during this time.

3. Swim-up Stage:  As the yolk sac is nearly absorbed, the fry will become more active and begin to “swim up” in the water column, instinctively searching for their first meal. This is a critical moment, and the timing of first feeding is crucial.

4. First Feeding:  Once a majority of the fry are swimming up, feeding should commence. A high-protein starter feed (mash or fine crumble) should be offered frequently (e.g., every 15-30 minutes) throughout the day to ensure all fry have an opportunity to eat. Fish that fail to learn to feed at this stage (known as “pinheads”) will not survive.

After first feeding begins, the fry are moved from incubators to small nursery troughs or tanks where they can be carefully managed for the first few weeks of rearing.

The Importance of Record Keeping

Accurate and consistent record-keeping is not just administrative work; it is an essential management tool for a successful hatchery. It allows for performance tracking, problem diagnosis, and future planning.

Key records to maintain include:

Spawning Records:  For each spawning event, log the date, brood stock strain, number of females and males used, and total egg yield.

Incubation and Hatching Log:  Track each egg batch with details on egg numbers, water temperature, degree-days, date of eyeing, mortality rates (number of picked eggs), and hatch date. This helps calculate survival rates to eye-up and to hatch.

Feed Log:  Record the type of feed, amount fed daily, and feeding frequency for each tank. This is used to calculate feed conversion ratios (FCR).

Growth and Inventory Records:  Conduct regular sample counts to monitor growth rates (weight and length) and update inventory numbers. This is vital for production planning and forecasting.

Water Quality Log:  Daily records of temperature, dissolved oxygen, pH, and other relevant parameters. Any deviations from the norm can be quickly identified and addressed.

Disease and Treatment Records:  Document any disease outbreaks, diagnoses, treatments administered (chemical type, dose, duration), and resulting mortalities.

By analyzing these records over time, a hatchery manager can optimize production protocols, improve efficiency, identify genetic lines with superior performance, and ensure the long-term sustainability and profitability of the operation.

Conclusion

The successful breeding and hatchery operation of rainbow trout is a complex but rewarding endeavor that combines biological science with precise technical management. From the careful selection and conditioning of brood stock to the meticulous control of the incubation environment, every step plays a vital role in the production of healthy, high-quality fry.

Understanding the fundamental principles of trout biology, mastering artificial propagation techniques like the dry stripping method, and implementing rigorous protocols for water quality management and record-keeping are the keys to success. As technology and genetic knowledge continue to advance, the efficiency and sustainability of trout aquaculture will further improve, solidifying its role as a critical source of healthy protein for a growing global population.

This course provides the foundational knowledge and practical skills necessary to operate a modern trout hatchery, empowering farmers and technicians to contribute to this dynamic and important industry.

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In the Salish Sea, Killer Whales and Salmon Spark Deeper Conflicts Beyond Fishing https://fisheriesindia.com/2025/09/in-the-salish-sea-killer-whales-and-salmon-spark-deeper-conflicts-beyond-fishing.html https://fisheriesindia.com/2025/09/in-the-salish-sea-killer-whales-and-salmon-spark-deeper-conflicts-beyond-fishing.html#respond Mon, 22 Sep 2025 04:49:00 +0000 https://fisheriesindia.com/?p=6577 Read more

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Endangered Killer Whales and Struggling Salmon at the Center of Conflict

In the Salish Sea, a critical ecological and cultural region of the Pacific Northwest, southern resident killer whales and the endangered Chinook salmon they rely on are at the heart of a growing conservation debate.

Since 2019, Canada’s Department of Fisheries and Oceans (DFO) has implemented protective measures, including:

  • Area-based closures for recreational salmon fishing
  • Interim sanctuary zones for whales
  • Seasonal voluntary vessel slowdowns

While aimed at protecting whales and salmon, these measures have fueled tensions between recreational fishers and conservationists. The issue has gained national attention in Canada and even influenced fishery debates in Alaska.

Why This Conflict Matters

Environmental conflicts like this go far beyond fishing. They reflect broader struggles over:

  • Community needs
  • Conservation values
  • Trust in government decision-making

When poorly managed, these disputes can polarize communities. But when handled collaboratively, they can spark dialogue, trust, and long-term solutions.

Research Insights: Beyond “Fishers vs. Conservationists”

A recent study involving over 700 British Columbians revealed surprising overlaps:

  • Nearly one-third of conservationists also identified as anglers.
  • Almost half of anglers also identified as conservationists.

This shows that people hold multifaceted identities and cannot simply be divided into opposing sides. Yet, public debates often reduce the issue to binary positions:

  • Should fishing be restricted to protect killer whales?
  • Or should access for fishers take priority?

In reality, both groups deeply value the Salish Sea ecosystem but disagree on management priorities.

What the Study Found

  • Shared Values: Both anglers and conservationists tied their identity and well-being to the environment.
  • Different Priorities: Conservationists emphasized protecting species regardless of human benefit, while some anglers favored balancing conservation with human use.
  • Social Media Effect: Survey responses showed moderate, respectful views. However, Facebook discussions revealed more hostility, anger, and polarization—showing how online platforms can amplify conflict.

Transforming Conflict Through Collaboration

Researchers argue that the DFO and other decision-makers should shift their approach by:

  • Recognizing deeper social roots of conflict such as values, beliefs, and identity.
  • Investing in long-term dialogue and relationship-building.
  • Encouraging transformative conflict resolution rather than short-term fixes.

Examples from cougar management in the U.S. and elephant conservation in Mozambique show that conflict transformation can create durable, trust-based solutions.

The Bigger Picture: Climate Change and Conservation

As climate change, habitat loss, and species decline intensify, conflicts like the one in the Salish Sea will only grow. At their core, these conflicts are not just about whales or salmon—they are about people, communities, and values.

Instead of treating conflicts as inconveniences, policymakers can use them as opportunities to:

  • Build trust and cooperation
  • Strengthen evidence-based policies
  • Support coexistence between humans and wildlife

Conclusion

The conflict over southern resident killer whales and Chinook salmon in the Salish Sea illustrates the challenges of modern conservation. By embracing collaborative, transformative approaches, decision-makers can move beyond polarization and foster solutions that respect both ecosystems and communities.

Reference: Lauren E. Eckert et al., Identifying opportunities toward conflict transformation in an Orca‐Salmon‐Human system, Conservation Science and Practice (2025). DOI: 10.1111/csp2.70108

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Genetic Fingerprint Approach Enhances Detection of Gene-Edited Organisms https://fisheriesindia.com/2025/09/genetic-fingerprint-approach-enhances-detection-of-gene-edited-organisms.html https://fisheriesindia.com/2025/09/genetic-fingerprint-approach-enhances-detection-of-gene-edited-organisms.html#respond Sun, 21 Sep 2025 05:12:00 +0000 https://fisheriesindia.com/?p=6602 Read more

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Researchers from the Belgian Federal Institute Sciensano, working within the DARWIN project, have developed a genetic fingerprinting method that enhances the detection of gene-edited organisms in the food chain. This proof-of-concept demonstrates how genome database mining, combined with advanced sequencing and machine learning, can make it possible to accurately identify even subtle genetic modifications introduced through New Genomic Techniques (NGTs).

The study, published in Food Research International, represents a major step toward regulatory compliance, consumer trust, and traceability in food systems.


Breakthrough in Gene-Edited Rice Detection

The research focused on a genome-edited Nipponbare rice line with a single CRISPR-Cas-induced single nucleotide variation (SNV). Using whole-genome sequencing, researchers confirmed no off-target mutations and created a unique genetic fingerprint combining:

  • The on-target mutation site
  • Cultivar-specific barcodes made from pairs of SNVs unique to a rice variety

By analyzing more than 3,000 publicly available rice genomes, the team applied machine learning to identify these minimal marker sets, forming a reliable genetic barcode for each cultivar.


High Sensitivity and Accuracy

The results revealed that the approach could detect and identify genome-edited rice lines at very low levels (0.9% and 0.1%), proving its sensitivity for food-chain monitoring.

This means that even organisms with subtle genetic edits—often challenging to trace—can, in principle, be uniquely identified when prior genomic information is available.


Benefits for Food Safety and Regulation

According to Nancy Roosens, Head of Division at Sciensano, the method is best suited for gene-edited organisms with a fully sequenced and well-characterized genetic background, especially when supported by open-access genome databases.

Key potential benefits include:

  • Supporting EU regulatory discussions on gene-edited crops
  • Enhancing transparency in food systems
  • Improving traceability for consumers and regulators
  • Boosting scientific knowledge on innovative plant breeding technologies

However, the researchers emphasize that routine application will require overcoming challenges, including the need for broader genomic data sharing and efficient cataloging of modifications.


Implications for the Future of NGT Detection

This genetic fingerprint strategy highlights a promising path toward robust detection methods for new genomic techniques. It also strengthens the goals of the DARWIN project, which aims to deliver reliable tools ensuring food system transparency.

As gene-edited crops and foods become more common, having reliable methods for unambiguous detection will be essential for maintaining consumer trust and regulatory oversight.


Study Reference

Marie-Alice Fraiture et al. Genetic fingerprints derived from genome database mining allow accurate identification of genome-edited rice in the food chain via targeted high-throughput sequencing. Food Research International (2025).
DOI: 10.1016/j.foodres.2025.117218

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AI Technology Detects Stress Levels in Farmed Amazonian Tambaqui Fish https://fisheriesindia.com/2025/09/__trashed-141.html https://fisheriesindia.com/2025/09/__trashed-141.html#respond Sat, 20 Sep 2025 03:49:00 +0000 https://fisheriesindia.com/?p=6608 Read more

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Researchers from São Paulo State University (UNESP) in Jaboticabal, in partnership with EMBRAPA (Brazilian Agricultural Research Corporation), have developed an artificial intelligence (AI) tool capable of measuring stress levels in tambaqui (Colossoma macropomum), the most widely farmed native fish species in Brazil.

The findings, published in the journal Aquaculture, mark an important step toward improving animal welfare and enabling the genetic selection of stress-tolerant fish for aquaculture.


Why Tambaqui Stress Monitoring Matters

Tambaqui is an Amazonian freshwater species and a cornerstone of Brazilian aquaculture, with 110,000 tons produced in 2022. Stress management is critical in fish farming because it directly affects:

  • Growth performance
  • Disease resistance
  • Overall animal welfare

The research team found that tambaqui exposed to confined conditions or treated with stress hormones displayed darker body coloration. This visible trait became the basis for training AI software to detect stress automatically.


How the AI Tool Works

The scientists used 3,780 images of tambaqui from two populations:

  • 1,280 fish from CAUNESP
  • 2,500 fish from EMBRAPA in Tocantins

By marking the lower half of the body in each photo, the team trained a deep learning model to analyze the ratio of black to white pixels. This allowed the system to identify a threshold for stress detection.

Interestingly, since the Tocantins fish had known ancestry records, the researchers were also able to demonstrate that stress tolerance is heritable, meaning selective breeding programs could produce more resilient generations of farmed tambaqui.


Physiological Mechanisms Behind Stress

Fish often display color changes when stressed, a phenomenon also seen in tilapia (Oreochromis niloticus). The process is triggered by stress hormones like α-MSH (melanocyte-stimulating hormone), which expand melanophores (black pigment cells) in the skin and scales.

To confirm this in tambaqui, the team conducted two experiments:

  1. Hormone exposure test – Scales soaked in α-MSH solution darkened significantly after 30 minutes.
  2. Confinement study – Fish transferred from large 200 m² tanks to smaller 2,000-liter reservoirs developed darker coloration after 10 days.

These findings proved that darker pigmentation is a reliable stress indicator in tambaqui.


Applications for Sustainable Aquaculture

The AI-based stress detection tool offers several benefits for fish farming:

  • Real-time monitoring of animal welfare using simple photographs
  • Guidance for farm management, such as adjusting stocking density
  • Support for selective breeding of stress-tolerant fish
  • Contribution to better productivity and disease resistance in aquaculture

According to project coordinator Diogo Hashimoto, the goal is to ensure future generations of tambaqui show improved well-being and performance in farming environments.


Study Reference

Celma G. Lemos et al. Deep learning approach for genetic selection of stress response in the Amazon fish Colossoma macropomum. Aquaculture (2025).
DOI: 10.1016/j.aquaculture.2025.742848

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Climate Change is Pushing Fish Stocks From National Waters to the High Seas, Study Reveals https://fisheriesindia.com/2025/09/climate-change-is-pushing-fish-stocks-from-national-waters-to-the-high-seas-study-reveals.html https://fisheriesindia.com/2025/09/climate-change-is-pushing-fish-stocks-from-national-waters-to-the-high-seas-study-reveals.html#respond Fri, 19 Sep 2025 04:11:00 +0000 https://fisheriesindia.com/?p=6660 Read more

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Climate change is rapidly altering the world’s oceans, forcing many commercially important fish species to shift their natural ranges. According to a new study published in Science Advances, more than half of the world’s straddling fish stocks—species that migrate between national waters and international high seas—will cross maritime borders by 2050.

Most of these shifts will move stocks into the high seas, an area where fisheries management is weak, leaving species more vulnerable to overfishing.


What Are Straddling Fish Stocks?

Straddling stocks are species whose populations overlap between exclusive economic zones (EEZs)—waters up to 200 nautical miles from a country’s coast—and the open ocean. Examples include:

  • Silky sharks (Carcharhinus falciformis)
  • Blue sharks (Prionace glauca)
  • Skipjack tuna (Katsuwonus pelamis)
  • Yellowfin tuna (Thunnus albacares)

These species are vital for global food security and economies, especially in developing countries that depend heavily on fisheries revenue.


Why Climate Change Is Driving the Shift

Rising sea temperatures, changing salinity levels, and declining oxygen are forcing fish to seek new habitats. The study used advanced modeling systems to project these shifts and found:

  • One-third of identified stocks will move into the high seas by 2050.
  • One-fifth will shift into EEZs, but mostly in temperate rather than tropical waters.
  • Both low-emission and high-emission scenarios showed similar patterns up to 2050.

As marine species move, tropical countries—least responsible for climate change—are at risk of losing access to critical fisheries resources.


Consequences for Tropical Nations

For many small island developing states (SIDS), tuna fisheries represent a financial lifeline. Nations like Kiribati, Solomon Islands, and Papua New Guinea collectively sell access rights to tuna fishing in their EEZs, generating essential revenue.

However, the study predicts that 58% of straddling stocks in the central Indo-Pacific region will move into the high seas, leaving tropical nations at a disadvantage. Without strong governance, they may lose both food security and economic stability.


Calls for Better Fisheries Governance

Experts argue that climate-driven shifts demand stronger international cooperation. Currently, Regional Fisheries Management Organizations (RFMOs) such as the Western and Central Pacific Fisheries Commission (WCPFC) and the Inter-American Tropical Tuna Commission (IATTC) are responsible for tuna stocks, but critics say these organizations are slow to adapt to climate challenges.

Some researchers, including co-author Rashid Sumaila, even call for a ban on high seas fishing, suggesting that it could protect biodiversity and prevent wealthy nations from monopolizing displaced fish stocks.


The Urgent Need for Climate-Resilient Fisheries

The study highlights two critical issues:

  1. Equity and justice – Tropical nations risk losing fisheries resources despite contributing little to climate change.
  2. Sustainability – The high seas are poorly regulated, increasing the risk of overexploitation.

Experts stress that nations and international bodies must adopt climate-informed fisheries management, including:

  • Improved data collection and stock monitoring
  • Stronger collaboration between RFMOs
  • Localized studies to understand regional shifts

As lead author Juliano Palacios-Abrantes notes, “Climate change is sending a whole bunch of fisheries out into the lion’s den.”


Final Thoughts

The redistribution of fish stocks due to climate change poses serious ecological, economic, and social challenges. Without urgent action, tropical nations stand to lose critical resources while the high seas become a hotspot for overfishing.

This study serves as a wake-up call for policymakers, fisheries managers, and conservationists to ensure that future ocean governance is fair, sustainable, and climate-resilient.


Source: Palacios-Abrantes et al. (2025), Science AdvancesDOI: 10.1126/sciadv.adq5976

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Beloved Giant Pacific Octopus “Ghost” Captures Hearts as She Enters Final Life Stage at Aquarium of the Pacific https://fisheriesindia.com/2025/09/beloved-giant-pacific-octopus-ghost-captures-hearts-as-she-enters-final-life-stage-at-aquarium-of-the-pacific.html https://fisheriesindia.com/2025/09/beloved-giant-pacific-octopus-ghost-captures-hearts-as-she-enters-final-life-stage-at-aquarium-of-the-pacific.html#respond Thu, 18 Sep 2025 04:23:00 +0000 https://fisheriesindia.com/?p=6725 Read more

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Ghost the Giant Pacific Octopus: A Farewell Full of Love

Marine life lovers across California and beyond are sending heartfelt goodbyes to Ghost, a giant Pacific octopus at Aquarium of the Pacific in Long Beach, as she enters the final phase of her life. Ghost is now focused entirely on caring for her eggs—a natural part of the octopus life cycle known as senescence—even though the eggs are unfertilized and will never hatch.

Social media has been flooded with tributes from fans who remember Ghost from past visits. Some have even shared tattoos and souvenirs featuring her image. The aquarium posted, “She is a wonderful octopus and has made an eight-armed impression on all of our hearts,” highlighting her unique bond with visitors.


Understanding Senescence in Giant Pacific Octopuses

Giant Pacific octopuses (Enteroctopus dofleini) live an average of three to five years. During senescence, female octopuses stop eating and devote all their remaining energy to protecting and aerating their eggs. This process prevents harmful bacteria from growing on them—an instinctive behavior observed both in the wild and in captivity.

According to Nate Jaros, Vice President of Animal Care at the aquarium, octopuses are solitary creatures:

“You really can’t combine males and females for long periods because they don’t naturally cohabitate. There’s a high risk of aggression or even death.”


Ghost’s Journey: From British Columbia to California

Ghost originally came from the waters of British Columbia, Canada, and arrived at the aquarium in May 2024 weighing just 3 pounds (1.4 kg). Over time, she grew to an impressive 50 pounds (22.7 kg) and became known for her playful and interactive nature.

Jaros described Ghost as “super active and very physical,” noting that she often pushed aside food just to interact with her caregivers. She was trained to crawl into a basket voluntarily for weighing, a testament to the intelligence and adaptability of giant Pacific octopuses.


Enrichment and Intelligence: Ghost’s Legacy

Aquarium staff provided Ghost with toys, puzzles, and even a custom-built acrylic maze to keep her stimulated—challenges she mastered almost instantly. Such enrichment activities mimic hunting behaviors in the wild, like catching crabs and clams.

Jaros added:

“Octopuses are incredibly special because of how charismatic and intelligent they seem to be. We form strong bonds with these animals.”


A New Octopus Will Continue Ghost’s Mission

While Ghost is receiving private care during her final days, the aquarium has already welcomed a new young octopus, weighing about 2 pounds (900 g). Staff will spend time observing its personality before choosing a name. Early impressions suggest the newcomer is “super curious” and “very outgoing,” promising to continue Ghost’s role as an ambassador for ocean education.


Fans Reflect on Ghost’s Impact

Marine biology student Jay McMahon from Los Angeles expressed his gratitude for seeing Ghost again recently:

“When you make a connection with an animal like that and you know they don’t live for long, every moment means a lot. I hope she inspires people to learn more about octopuses and their importance.”

Ghost’s story highlights the incredible intelligence and emotional connection these marine creatures can create. Her legacy will live on through the people she inspired and the new octopus ready to educate and captivate future visitors.

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Fully Funded PhD Position in Environmental Microbiology at ETH Zurich, Switzerland https://fisheriesindia.com/2025/09/fully-funded-phd-position-in-environmental-microbiology-at-eth-zurich-switzerland.html https://fisheriesindia.com/2025/09/fully-funded-phd-position-in-environmental-microbiology-at-eth-zurich-switzerland.html#respond Wed, 17 Sep 2025 09:40:00 +0000 https://fisheriesindia.com/?p=6511 Read more

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The Department of Environmental Systems Science at ETH Zurich is inviting applications for a fully funded PhD position in the Environmental Microbiology Group, led by Prof. Marie Schölmerich. This exciting opportunity begins in Spring 2026 (or upon mutual agreement) and offers the chance to conduct cutting-edge research in anaerobic microbiology.

About the Research

The Environmental Microbiology Group studies microorganisms that use ancient metabolic pathways to transform greenhouse gases like carbon dioxide and methane. By combining metagenomics, classical microbiology, and biochemistry, the team explores how microbes shape biogeochemical cycles and contribute to sustainable technologies.

This specific PhD project will focus on re-wetted peatlands, aiming to:

  • Characterize shifts in microbial communities
  • Uncover molecular mechanisms driving these ecological transformations

Research Activities Include:

  • Fieldwork in peatland ecosystems
  • Metagenomic and metatranscriptomic analyses
  • Microcosm experiments
  • Isolation and cultivation of anaerobic microorganisms

Candidate Profile

Required Qualifications:

  • M.Sc. degree in Environmental Sciences, Microbiology, Biology, Bioinformatics, or a related field
  • Strong background in microbiology and molecular biology techniques
  • Excellent written and spoken English communication skills
  • Ability to work effectively in a team environment

Preferred Experience:

  • Previous fieldwork in ecological or microbiological studies
  • Familiarity with anaerobic microorganisms

What ETH Zurich Offers

Successful candidates will benefit from:

  • A fully funded PhD position with access to advanced laboratory and computational resources
  • A collaborative, interdisciplinary, and international research environment
  • Opportunities for conference travel, workshops, and career development
  • A family-friendly environment with world-class academic and cultural support
  • Access to ETH Zurich’s renowned facilities and benefits

ETH Zurich is one of the world’s leading universities in science and technology, with over 30,000 students and staff from 120+ countries, known for excellence in research, education, and innovation.

Frequently Asked Questions (FAQ)

1. Is the PhD position fully funded?
Yes, this is a full-time, fully funded doctoral position at ETH Zurich.

2. What is the main research focus?
The project examines microbial community changes in re-wetted peatlands, with a focus on anaerobic microorganisms and their role in greenhouse gas transformations.

3. Can international students apply?
Yes, ETH Zurich encourages global applications.

4. Do I need prior experience with anaerobic microorganisms?
It is preferred but not mandatory. Training will be provided.

5. What is the application deadline?
The deadline is October 3, 2025.

Application Process

Applications must be submitted exclusively via the ETH Zurich online application portal. Submissions by email or post will not be considered.

Required Documents:

  • Cover Letter
  • Curriculum Vitae (CV), including publications (if any)
  • Diploma and Transcript of Records
  • Contact details of two references

Deadline: October 3, 2025
Start Date: Spring 2026 or as agreed

👉 Apply Online via ETH Zurich Portal

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Octopus Arms Show Astonishing Flexibility and Movement in New Scientific Study https://fisheriesindia.com/2025/09/octopus-arms-show-astonishing-flexibility-and-movement-in-new-scientific-study.html https://fisheriesindia.com/2025/09/octopus-arms-show-astonishing-flexibility-and-movement-in-new-scientific-study.html#respond Wed, 17 Sep 2025 05:11:00 +0000 https://fisheriesindia.com/?p=6739 Read more

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Octopus arms are among the most flexible and versatile structures in the natural world. Their unique agility has inspired robotics researchers to explore new designs for soft, flexible robots that could navigate tight spaces, perform delicate tasks, or even deliver vital supplies during rescue missions in disaster zones.

A groundbreaking study by scientists from the Marine Biological Laboratory (MBL) in Woods Hole and Florida Atlantic University (FAU) has now produced the most detailed behavioral catalog of octopus arm movements ever recorded. Published in Scientific Reports (2025), this research sheds new light on how octopuses use their eight arms for foraging, locomotion, and interaction with their environment.


📹 Studying Octopuses in Their Natural Habitat

Researchers video-recorded 25 wild octopuses across six locations in the Atlantic Ocean, Caribbean Sea, and Spain. This field-based approach allowed them to observe behaviors that could never be fully replicated in laboratory settings.

“Recording octopuses in their natural environment gave us a deeper understanding of their complex behaviors,” explained Chelsea Bennice, FAU research fellow and first author of the study.

Senior scientist Roger Hanlon of MBL, who has studied cephalopods for over 25 years, emphasized that this is the first full ethogram—a detailed catalog—of wild octopus arm movements. Earlier studies were mostly conducted in laboratory tanks, limiting the range of behaviors observed.


🌊 Sensory Superpowers and Camouflage

Octopuses rely heavily on tactile sensing through their suckers rather than on vision. Each arm contains about 100 highly sensitive suckers, which Hanlon describes as “chemo-tactile geniuses”—combining the functions of the human nose, lips, and tongue in one structure.

Their camouflage abilities—rapidly changing skin color and texture—made them challenging to locate in the wild. Divers searched for clues like leftover shells and food debris to find octopus dens. Octopuses typically spend 80% of their time hidden in dens, emerging once or twice daily to forage.


🔬 Breaking Down the Movements

The researchers analyzed field footage frame-by-frame, dividing each arm into three segments to document 12 distinct types of movements. Key discoveries include:

  • Elongation and shortening occur mostly near the base of the arm.
  • Bending and fine probing are more common at the tips.
  • Arms are used for walking on the seafloor, swimming, probing crevices for prey, and manipulating objects.

“These actions form the foundation of all octopus behaviors,” said Kendra Buresch, MBL co-author.


🤖 Inspiring Next-Generation Robotics

This research has significant implications beyond marine biology. Robotics engineers are eager to replicate octopus-like movement for search-and-rescue missions or medical devices that can navigate narrow passages inside the human body.

Hanlon highlights the potential:

“To deliver tools or supplies into tight spaces—whether under rubble or underwater—you need a flexible, precise appendage like an octopus arm.”


📑 Study Reference

Source: Marine Biological Laboratory and Florida Atlantic University
Published in: Scientific Reports (2025)
DOI: 10.1038/s41598-025-10674-y

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12 Fully Funded PhD Positions – Cologne Graduate School of Ageing Research, Germany https://fisheriesindia.com/2025/09/12-fully-funded-phd-positions-cologne-graduate-school-of-ageing-research-germany.html https://fisheriesindia.com/2025/09/12-fully-funded-phd-positions-cologne-graduate-school-of-ageing-research-germany.html#respond Tue, 16 Sep 2025 10:09:47 +0000 https://fisheriesindia.com/?p=6620 Read more

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The Cologne Graduate School of Ageing Research (CGA) is offering 12 fully funded PhD positions for outstanding young scientists. The program begins between July 1 and October 1, 2026, and provides a unique opportunity to train in one of Europe’s leading research hubs on ageing and age-related diseases.


About the Graduate School

CGA is a joint initiative of four world-class institutions in Cologne, Germany:

  • University of Cologne Excellence Cluster on Stress Responses in Aging-Associated Diseases (CECAD)
  • University Hospital Cologne
  • Max Planck Institute for Biology of Ageing
  • Max Planck Institute for Metabolism Research

The program offers exceptional training in developmental biology, evolutionary biology, genetics, structural biology, metabolism, and cell biology, with 49 interdisciplinary research groups working at the forefront of ageing science.


What the Program Offers

Successful PhD fellows will benefit from:

  • Fully funded 3+ year contracts under TV-L E13 (65%) or Max Planck equivalent
  • An international research environment with cutting-edge facilities
  • Comprehensive PhD training program conducted entirely in English
  • Dedicated supervision and mentoring via thesis advisory committees
  • Career coaching plus methodology and soft skills courses
  • Annual conference travel grants
  • Full relocation and visa support for international students
  • A vibrant academic and cultural life in Cologne, Germany

Candidate Profile

CGA seeks highly motivated and talented candidates who have:

  • An MSc or equivalent degree in:
    • Biology
    • Molecular or Cell Biology
    • Biochemistry
    • Bioengineering
    • Bioinformatics
    • Biophysics
    • Genetics
    • Medical Biology
    • Translational Medicine
    • Or related disciplines
  • Excellent academic records in BSc and MSc studies
  • Strong passion for ageing research
  • Proficiency in English at C1 level (written and spoken)

Application Details


Diversity and Inclusion

CGA is deeply committed to equal opportunities and diversity.

  • Applications from women are strongly encouraged.
  • Applicants with disabilities will be given preference in cases of equal qualifications.
  • The program actively welcomes international researchers from all backgrounds.

Frequently Asked Questions

1. How many positions are available?
There are 12 fully funded PhD positions.

2. What is the duration of the PhD program?
At least 3 years, with possible extensions.

3. Do I need to speak German?
No. The entire program is conducted in English.

4. Can international students apply?
Yes. CGA provides full support for visas and relocation.

5. What is the salary?
PhD fellows are paid under TV-L E13 (65%) or equivalent Max Planck contracts.

6. What is the deadline?
Applications close on November 3, 2025.

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Octopus Arms Show Specialized Movements and Complex Coordination in the Wild https://fisheriesindia.com/2025/09/octopus-arms-show-specialized-movements-and-complex-coordination-in-the-wild.html https://fisheriesindia.com/2025/09/octopus-arms-show-specialized-movements-and-complex-coordination-in-the-wild.html#respond Tue, 16 Sep 2025 03:45:00 +0000 https://fisheriesindia.com/?p=6753 Read more

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Octopuses are some of the most intelligent and flexible invertebrates on Earth. With eight highly adaptable arms, these marine animals can hunt prey, communicate, build shelters, and even defend themselves—all while thriving in diverse underwater habitats.

New Study Explores Octopus Arm Movements in Natural Habitats

A groundbreaking study by Florida Atlantic University’s Charles E. Schmidt College of Science, in collaboration with the Marine Biological Laboratory (MBL) in Woods Hole, Massachusetts, has revealed how wild octopuses use their arms with precision and versatility. Published in Scientific Reports, this is the first research to connect octopus arm movements to whole-body behaviors in complex, real-world environments.

Researchers observed three octopus species across six shallow-water habitats—five in the Caribbean and one in Spain. By analyzing nearly 4,000 arm movements from 25 underwater videos, they identified 12 unique arm actions tied to 15 different behaviors.

Front and Back Arms Play Different Roles

The study discovered that while every arm can perform any type of movement, there’s a clear division of labor. Front arms are mainly used for exploration—feeling around rocks or probing crevices—while back arms are more involved in propulsion and movement.

Four Types of Arm Deformation Observed

The team documented almost 7,000 arm deformations, including:

  • Bending – Curving the arm, mostly near the tips.
  • Elongating – Extending the arm, usually closer to the body.
  • Shortening – Contracting the arm to pull objects or reposition.
  • Torsion (Twisting) – Rotating for grip or manipulation.

These specialized movements highlight the complex motor control octopuses possess. Sometimes, a single arm worked independently—like grabbing prey—while in other instances, multiple arms coordinated for actions like crawling or ambush hunting, also known as “parachute attacks.”

Adaptations for Survival and Camouflage

Lead author Chelsea O. Bennice, Ph.D., explained that octopuses rely on these abilities not just for foraging but also for survival tactics. For example, when crossing open areas, they may use several arms to mimic floating seaweed or moving rocks to stay hidden from predators. Their flexible arms are also critical for:

  • Building protective dens.
  • Competing with rival males during mating.
  • Fending off predators.

Importance for Neuroscience and Robotics

Co-author Roger Hanlon, Ph.D., emphasized that studying octopuses in their natural habitats provides vital insights into their sensory world. These findings could inspire advances in soft robotics, neuroscience, and animal behavior research, as octopus arms are a living model of dexterity and adaptability.

Diverse Habitats Studied

The research covered a variety of environments, from smooth sandy seabeds to complex coral reefs, showing how octopuses adjust their movements depending on habitat. This adaptability is a key reason why octopuses thrive in such a wide range of ecosystems.

Why This Matters

Understanding how octopuses coordinate their arms deepens our knowledge of marine biology and could influence future technology. As Bennice noted, “These versatile abilities allow octopuses to thrive in a wide range of habitats, and studying them opens exciting opportunities for innovation in multiple scientific fields.”


Reference:
Florida Atlantic University and Marine Biological Laboratory. Octopus arm flexibility facilitates complex behaviors in diverse natural environments. Scientific Reports (2025). DOI: 10.1038/s41598-025-10674-y

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